]> git.donarmstrong.com Git - mothur.git/blobdiff - consensusseqscommand.cpp
1.23.0
[mothur.git] / consensusseqscommand.cpp
index e32867f3737b27bc3b9e929a73f142fe564d48c4..4f8c53bc9b8cd70fab82a13cd8507a8e5719a07a 100644 (file)
@@ -159,7 +159,7 @@ ConsensusSeqsCommand::ConsensusSeqsCommand(string option)  {
                        }
                        
                        string temp = validParameter.validFile(parameters, "cutoff", false);  if (temp == "not found") { temp = "100"; }
-                       convert(temp, cutoff); 
+                       m->mothurConvert(temp, cutoff); 
                        
                        //if the user changes the output directory command factory will send this info to us in the output parameter 
                        outputDir = validParameter.validFile(parameters, "outputdir", false);           if (outputDir == "not found"){  outputDir = m->hasPath(fastafile);      }