moved utilities out of mothur.h and into mothurOut class.

[mothur.git] / consensuscommand.cpp

diff --git a/consensuscommand.cpp b/consensuscommand.cpp
index 2fef5b16a062ed99cd90c2fc43e7617c25d5ee13..a65d56fb86c2a8a91ac2915def73d05c7e53b6d6 100644 (file)
--- a/consensuscommand.cpp
+++ b/consensuscommand.cpp
@@ -68,7 +68,7 @@ int ConcensusCommand::execute(){
                
                //open file for pairing not included in the tree
                notIncluded = filename + ".cons.pairs";
-               openOutputFile(notIncluded, out2);
+               m->openOutputFile(notIncluded, out2);
                
                consensusTree = new Tree();
                
@@ -151,7 +151,7 @@ int ConcensusCommand::execute(){
                }
                
                outputFile = filename + ".cons.tre";
-               openOutputFile(outputFile, out);
+               m->openOutputFile(outputFile, out);
                
                consensusTree->printForBoot(out);