fixes while testing

[mothur.git] / consensuscommand.cpp

diff --git a/consensuscommand.cpp b/consensuscommand.cpp
index a7469902d44cb9f16b4a109f8e0bc7a0182f7f86..0671790a2152801536e3f1bf05335a86f86fca13 100644 (file)
--- a/consensuscommand.cpp
+++ b/consensuscommand.cpp
@@ -46,6 +46,7 @@ vector<string> ConcensusCommand::getRequiredFiles(){
 //**********************************************************************************************************************
 ConcensusCommand::ConcensusCommand(){  
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["tree"] = tempOutNames;