added mothur.h and fixed includes in many files

[mothur.git] / commandoptionparser.cpp

diff --git a/commandoptionparser.cpp b/commandoptionparser.cpp
index 893d0d9cc0b043b5ccd6f37b45add01445e27152..dcfcf435cbb5d896cc41f9e20c07e54ca44c6a4d 100644 (file)
--- a/commandoptionparser.cpp
+++ b/commandoptionparser.cpp
@@ -7,14 +7,12 @@
  *
  */
 
-#include <string>
 
 using namespace std;
 
 #include "globaldata.hpp"
 #include "commandoptionparser.hpp"
-#include <exception>
-#include <iostream>
+#include "mothur.h"
 
 //**********************************************************************************************************************
 //This Function parses through the command line and pulls out the command then sends the options to  the parseGlobalData