started shared utilities, updates to venn and heatmap added tree.groups command

[mothur.git] / commandoptionparser.cpp

diff --git a/commandoptionparser.cpp b/commandoptionparser.cpp
index dcfcf435cbb5d896cc41f9e20c07e54ca44c6a4d..a46c0a6ccfc47859d06ae6cae21e87a441be460c 100644 (file)
--- a/commandoptionparser.cpp
+++ b/commandoptionparser.cpp
@@ -10,9 +10,10 @@
 
 using namespace std;
 
+
 #include "globaldata.hpp"
 #include "commandoptionparser.hpp"
-#include "mothur.h"
+
 
 //**********************************************************************************************************************
 //This Function parses through the command line and pulls out the command then sends the options to  the parseGlobalData