moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / commandoptionparser.cpp

diff --git a/commandoptionparser.cpp b/commandoptionparser.cpp
deleted file mode 100644 (file)
index dfad533..0000000
--- a/commandoptionparser.cpp
+++ /dev/null
@@ -1,50 +0,0 @@
-/*
- *  commandoptionparser.cpp
- *  
- *
- *  Created by Pat Schloss on 10/23/08.
- *  Copyright 2008 Patrick D. Schloss. All rights reserved.
- *
- */
-
-
-#include "commandoptionparser.hpp"
-
-
-//**********************************************************************************************************************
-//This Function parses through the command line and pulls out the command then sends the options to  the parseGlobalData
-CommandOptionParser::CommandOptionParser(string input){
-       try {
-               m = MothurOut::getInstance();
-               
-               int openParen = input.find_first_of('(');
-               int closeParen = input.find_last_of(')');
-               optionString = "";
-               commandString = "";
-
-               if(openParen != -1 && closeParen != -1){        
-            //gobble extra spaces
-            int spot = 0;
-            for (int i = 0; i < input.length(); i++) {  if (!(isspace(input[i]))) { spot = i; break; } }
-            if (spot > openParen) { spot = 0; }
-                       commandString = input.substr(spot, openParen-spot);   //commandString contains everything before "("
-                       optionString = input.substr((openParen+1), (closeParen-openParen-1)); //optionString contains everything between "(" and ")".
-               }
-               else if (openParen == -1) { m->mothurOut("[ERROR]: You are missing ("); m->mothurOutEndLine(); }
-               else if (closeParen == -1) { m->mothurOut("[ERROR]:You are missing )"); m->mothurOutEndLine(); }
-    }
-       catch(exception& e) {
-               m->errorOut(e, "CommandOptionParser", "CommandOptionParser");
-               exit(1);
-       }
-}
-
-//**********************************************************************************************************************
-
-string CommandOptionParser::getCommandString() {       return commandString;   }
-
-//**********************************************************************************************************************
-
-string CommandOptionParser::getOptionString()  {       return optionString;    }
-
-//**********************************************************************************************************************