random chagnes from pat

[mothur.git] / commandfactory.hpp

diff --git a/commandfactory.hpp b/commandfactory.hpp
index a6dc5b72e0b403df37dd77b7ee593ca5ff19de73..8b08c006312240676e1e1466a0470c7f3aa11eae 100644 (file)
--- a/commandfactory.hpp
+++ b/commandfactory.hpp
@@ -12,6 +12,7 @@
 \r
 #include "mothur.h"\r
 #include "mothurout.h"\r
+#include "currentfile.h"\r
 \r
 class Command;\r
 \r
@@ -37,7 +38,10 @@ private:
        Command* command;\r
        Command* shellcommand;\r
        Command* pipecommand;\r
+       \r
        MothurOut* m;\r
+       CurrentFile* currentFile;\r
+       \r
        map<string, string> commands;\r
        map<string, string>::iterator it;\r
        string outputDir, inputDir, logFileName;\r