added system command

[mothur.git] / commandfactory.cpp

diff --git a/commandfactory.cpp b/commandfactory.cpp
index c91dbf9abd520fc908698f68756d726d25002e95..fce55bbe9e856634a25b8141a3715965e88251b0 100644 (file)
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -53,6 +53,7 @@
 #include "listseqscommand.h"
 #include "getseqscommand.h"
 #include "removeseqscommand.h"
+#include "systemcommand.h"
 
 /***********************************************************/
 
@@ -104,6 +105,7 @@ CommandFactory::CommandFactory(){
        commands["list.seqs"]                   = "list.seqs";
        commands["get.seqs"]                    = "get.seqs";
        commands["remove.seqs"]                 = "get.seqs";
+       commands["system"]                              = "system";
        commands["quit"]                                = "quit"; 
 
 }
@@ -165,6 +167,7 @@ Command* CommandFactory::getCommand(string commandName, string optionString){
                else if(commandName == "get.seqs")                              {       command = new GetSeqsCommand(optionString);                             }
                else if(commandName == "remove.seqs")                   {       command = new RemoveSeqsCommand(optionString);                  }
                else if(commandName == "merge.files")                   {       command = new MergeFileCommand(optionString);                   }
+               else if(commandName == "system")                                {       command = new SystemCommand(optionString);                              }
                else                                                                                    {       command = new NoCommand(optionString);                                  }
 
                return command;