added get.repseqs command, started matrix output command

[mothur.git] / commandfactory.cpp

diff --git a/commandfactory.cpp b/commandfactory.cpp
index d41e4a81c76269baf17ca1c36b25ca5d1a57711b..e48bc6abaaf3d2169cf70ae442909d93d511849e 100644 (file)
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -42,6 +42,7 @@
 #include "concensuscommand.h"
 #include "distancecommand.h"
 #include "aligncommand.h"
+#include "getrepseqscommand.h"
 
 
 /***********************************************************/
@@ -89,6 +90,7 @@ Command* CommandFactory::getCommand(string commandName){
                else if(commandName == "filter.seqs")                   {   command = new FilterSeqsCommand();          }
                else if(commandName == "venn")                                  {   command = new VennCommand();                                }
                else if(commandName == "bin.seqs")                              {   command = new BinSeqCommand();                              }
+               else if(commandName == "get.repseqs")                   {   command = new GetRepSeqsCommand();                  }
                else if(commandName == "get.oturep")                    {   command = new GetOTURepCommand();                   }
                else if(commandName == "tree.shared")                   {   command = new TreeGroupCommand();                   }
                else if(commandName == "bootstrap.shared")              {   command = new BootSharedCommand();                  }