modified freq parameter be a percentage of numSeqs, added catchall command - not...

[mothur.git] / commandfactory.cpp

diff --git a/commandfactory.cpp b/commandfactory.cpp
index 9917b3cce2c2b4a48ac89ae4ab8a387921d1d74e..be85727f3cf5e9492041054e1f3296aad9aee660 100644 (file)
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -76,6 +76,7 @@
 #include "makegroupcommand.h"
 #include "chopseqscommand.h"
 #include "clearcutcommand.h"
+#include "catchallcommand.h"
 
 /*******************************************************/
 
@@ -159,6 +160,7 @@ CommandFactory::CommandFactory(){
        commands["make.group"]                  = "make.group";
        commands["chop.seqs"]                   = "chop.seqs";
        commands["clearcut"]                    = "clearcut";
+       commands["catchall"]                    = "catchall";
        commands["classify.seqs"]               = "MPIEnabled"; 
        commands["dist.seqs"]                   = "MPIEnabled";
        commands["filter.seqs"]                 = "MPIEnabled";
@@ -279,6 +281,7 @@ Command* CommandFactory::getCommand(string commandName, string optionString){
                else if(commandName == "make.group")                    {       command = new MakeGroupCommand(optionString);                           }
                else if(commandName == "chop.seqs")                             {       command = new ChopSeqsCommand(optionString);                            }
                else if(commandName == "clearcut")                              {       command = new ClearcutCommand(optionString);                            }
+               else if(commandName == "catchall")                              {       command = new CatchAllCommand(optionString);                            }
                else                                                                                    {       command = new NoCommand(optionString);                                          }
 
                return command;