added parse.list command

[mothur.git] / commandfactory.cpp

diff --git a/commandfactory.cpp b/commandfactory.cpp
index 964847478ae6e9e42f7ebb7c8ef35b5f452ff3f5..baef2164942f5e637f43d8b3b6431091ef13ca63 100644 (file)
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -64,6 +64,7 @@
 #include "pcacommand.h"
 #include "otuhierarchycommand.h"
 #include "setdircommand.h"
+#include "parselistscommand.h"
 
 /*******************************************************/
 
@@ -138,6 +139,7 @@ CommandFactory::CommandFactory(){
        commands["otu.hierarchy"]               = "otu.hierarchy";
        commands["set.dir"]                             = "set.dir";
        commands["merge.files"]                 = "merge.files";
+       commands["parse.list"]                  = "parse.list";
 }
 /***********************************************************/
 
@@ -220,7 +222,8 @@ Command* CommandFactory::getCommand(string commandName, string optionString){
                else if(commandName == "pre.cluster")                   {       command = new PreClusterCommand(optionString);                  }
                else if(commandName == "pcoa")                                  {       command = new PCACommand(optionString);                                 }
                else if(commandName == "otu.hierarchy")                 {       command = new OtuHierarchyCommand(optionString);                }
-               else if(commandName == "set.dir")                               {       command = new SetDirectoryCommand(optionString);        }
+               else if(commandName == "set.dir")                               {       command = new SetDirectoryCommand(optionString);                }
+               else if(commandName == "parse.list")                    {       command = new ParseListCommand(optionString);                   }
                else                                                                                    {       command = new NoCommand(optionString);                                  }
 
                return command;