started shared utilities, updates to venn and heatmap added tree.groups command

[mothur.git] / commandfactory.cpp

diff --git a/commandfactory.cpp b/commandfactory.cpp
index 5155095526d1a3d08f4b72ec5236c882400ba5ec..b4e68e4cd67de88de0198251f2d595c9e000a498 100644 (file)
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -32,10 +32,10 @@
 #include "libshuffcommand.h"
 #include "heatmapcommand.h"
 #include "venncommand.h"
-#include "mothur.h"
 #include "nocommands.h"
 #include "binsequencecommand.h"
 #include "getoturepcommand.h"
+#include "treegroupscommand.h"
 
 
 /***********************************************************/
@@ -83,6 +83,7 @@ Command* CommandFactory::getCommand(string commandName){
                else if(commandName == "venn")                                  {   command = new VennCommand();                                }
                else if(commandName == "bin.seqs")                              {   command = new BinSeqCommand();                              }
                else if(commandName == "get.oturep")                    {   command = new GetOTURepCommand();                   }
+               else if(commandName == "tree.groups")                   {   command = new TreeGroupCommand();                   }
                else                                                                                    {       command = new NoCommand();                                      }
 
                return command;