commands["pre.cluster"] = "pre.cluster";
commands["pcoa"] = "pcoa";
commands["otu.hierarchy"] = "otu.hierarchy";
- commands["set.dir"] = "set.dir";
+ commands["set.dir"] = "MPIEnabled";
commands["merge.files"] = "merge.files";
commands["parse.list"] = "parse.list";
commands["set.logfile"] = "set.logfile";
commands["anosim"] = "anosim";
commands["make.fastq"] = "make.fastq";
commands["merge.groups"] = "merge.groups";
- commands["get.current"] = "get.current";
- commands["set.current"] = "set.current";
+ commands["get.current"] = "MPIEnabled";
+ commands["set.current"] = "MPIEnabled";
commands["get.commandinfo"] = "get.commandinfo";
commands["deunique.tree"] = "deunique.tree";
commands["count.seqs"] = "count.seqs";