added get.rabund and get.sabund command and fixed bug introduced by line by line...

[mothur.git] / commandfactory.cpp

diff --git a/commandfactory.cpp b/commandfactory.cpp
index 0edb024b35084c16255ccc030f41efe271bf5826..9b6411855b19a8cee7a9f5a4489d8fc522a689c8 100644 (file)
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -43,8 +43,11 @@
 #include "distancecommand.h"
 #include "aligncommand.h"
 #include "matrixoutputcommand.h"
+#include "getsabundcommand.h"
+#include "getrabundcommand.h"
 #include "seqsummarycommand.h"
 
+
 /***********************************************************/
 
 /***********************************************************/
@@ -85,6 +88,8 @@ Command* CommandFactory::getCommand(string commandName){
                else if(commandName == "get.group")             {   command = new GetgroupCommand();                    }
                else if(commandName == "get.label")             {   command = new GetlabelCommand();                    }
                else if(commandName == "get.line")              {   command = new GetlineCommand();                             }
+               else if(commandName == "get.sabund")            {   command = new GetSAbundCommand();                   }
+               else if(commandName == "get.rabund")            {   command = new GetRAbundCommand();                   }
                else if(commandName == "libshuff")              {   command = new LibShuffCommand();                    }
                else if(commandName == "heatmap")                               {   command = new HeatMapCommand();                             }
                else if(commandName == "filter.seqs")                   {   command = new FilterSeqsCommand();          }