added deunique.tree command

[mothur.git] / commandfactory.cpp

diff --git a/commandfactory.cpp b/commandfactory.cpp
index 681e3e59f7e987a792b934d4ade36e182ed984ca..71558a9292280dcc9f28acb29b2944fb62a05eb6 100644 (file)
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -118,6 +118,7 @@
 #include "setcurrentcommand.h"
 #include "sharedcommand.h"
 #include "getcommandinfocommand.h"
+#include "deuniquetreecommand.h"
 
 /*******************************************************/
 
@@ -239,6 +240,7 @@ CommandFactory::CommandFactory(){
        commands["get.current"]                 = "get.current";
        commands["set.current"]                 = "set.current";
        commands["get.commandinfo"]             = "get.commandinfo";
+       commands["deunique.tree"]               = "deunique.tree";
        commands["pairwise.seqs"]               = "MPIEnabled";
        commands["pipeline.pds"]                = "MPIEnabled";
        commands["classify.seqs"]               = "MPIEnabled"; 
@@ -409,6 +411,7 @@ Command* CommandFactory::getCommand(string commandName, string optionString){
                else if(commandName == "anosim")                                {       command = new AnosimCommand(optionString);                                      }
                else if(commandName == "make.shared")                   {       command = new SharedCommand(optionString);                                      }
                else if(commandName == "get.commandinfo")               {       command = new GetCommandInfoCommand(optionString);                      }
+               else if(commandName == "deunique.tree")                 {       command = new DeuniqueTreeCommand(optionString);                        }
                else                                                                                    {       command = new NoCommand(optionString);                                          }
 
                return command;
@@ -545,6 +548,7 @@ Command* CommandFactory::getCommand(string commandName, string optionString, str
                else if(commandName == "set.current")                   {       pipecommand = new SetCurrentCommand(optionString);                              }
                else if(commandName == "make.shared")                   {       pipecommand = new SharedCommand(optionString);                                  }
                else if(commandName == "get.commandinfo")               {       pipecommand = new GetCommandInfoCommand(optionString);                  }
+               else if(commandName == "deunique.tree")                 {       pipecommand = new DeuniqueTreeCommand(optionString);                    }
                else                                                                                    {       pipecommand = new NoCommand(optionString);                                              }
 
                return pipecommand;
@@ -669,6 +673,7 @@ Command* CommandFactory::getCommand(string commandName){
                else if(commandName == "set.current")                   {       shellcommand = new SetCurrentCommand();                         }
                else if(commandName == "make.shared")                   {       shellcommand = new SharedCommand();                                     }
                else if(commandName == "get.commandinfo")               {       shellcommand = new GetCommandInfoCommand();                     }
+               else if(commandName == "deunique.tree")                 {       shellcommand = new DeuniqueTreeCommand();                       }
                else                                                                                    {       shellcommand = new NoCommand();                                         }
 
                return shellcommand;