changed random forest output filename

[mothur.git] / commandfactory.cpp

diff --git a/commandfactory.cpp b/commandfactory.cpp
index 41a67297c4199ab819ef7f0498dfd27e6debd515..6ceabbfc6eee41a10f70ef8391fc3a12e202696f 100644 (file)
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -312,7 +312,7 @@ CommandFactory::CommandFactory(){
     commands["get.dists"]           = "get.dists";
     commands["remove.dists"]        = "remove.dists";
     commands["merge.taxsummary"]    = "merge.taxsummary";
-    commands["get.metacommunity"]   = "get.metacommunity";
+    commands["get.communitytype"]   = "get.communitytype";
     commands["sparcc"]              = "sparcc";
     commands["make.lookup"]         = "make.lookup";
     commands["rename.seqs"]         = "rename.seqs";
@@ -539,7 +539,7 @@ Command* CommandFactory::getCommand(string commandName, string optionString){
         else if(commandName == "get.dists")             {      command = new GetDistsCommand(optionString);                }
         else if(commandName == "remove.dists")          {      command = new RemoveDistsCommand(optionString);             }
         else if(commandName == "merge.taxsummary")      {      command = new MergeTaxSummaryCommand(optionString);         }
-        else if(commandName == "get.metacommunity")     {      command = new GetMetaCommunityCommand(optionString);        }
+        else if(commandName == "get.communitytype")     {      command = new GetMetaCommunityCommand(optionString);        }
         else if(commandName == "sparcc")                {      command = new SparccCommand(optionString);                  }
         else if(commandName == "make.lookup")                  {       command = new MakeLookupCommand(optionString);                          }
         else if(commandName == "rename.seqs")                  {       command = new RenameSeqsCommand(optionString);                          }
@@ -707,7 +707,7 @@ Command* CommandFactory::getCommand(string commandName, string optionString, str
         else if(commandName == "get.dists")             {      pipecommand = new GetDistsCommand(optionString);                }
         else if(commandName == "remove.dists")          {      pipecommand = new RemoveDistsCommand(optionString);             }
         else if(commandName == "merge.taxsummary")      {      pipecommand = new MergeTaxSummaryCommand(optionString);         }
-        else if(commandName == "get.metacommunity")     {      pipecommand = new GetMetaCommunityCommand(optionString);        }
+        else if(commandName == "get.communitytype")     {      pipecommand = new GetMetaCommunityCommand(optionString);        }
         else if(commandName == "sparcc")                {      pipecommand = new SparccCommand(optionString);                  }
         else if(commandName == "make.lookup")                  {       pipecommand = new MakeLookupCommand(optionString);                              }
         else if(commandName == "rename.seqs")                  {       pipecommand = new RenameSeqsCommand(optionString);                              }
@@ -861,7 +861,7 @@ Command* CommandFactory::getCommand(string commandName){
         else if(commandName == "get.dists")             {      shellcommand = new GetDistsCommand();               }
         else if(commandName == "remove.dists")          {      shellcommand = new RemoveDistsCommand();            }
         else if(commandName == "merge.taxsummary")      {      shellcommand = new MergeTaxSummaryCommand();        }
-        else if(commandName == "get.metacommunity")     {      shellcommand = new GetMetaCommunityCommand();       }
+        else if(commandName == "get.communitytype")     {      shellcommand = new GetMetaCommunityCommand();       }
         else if(commandName == "sparcc")                {      shellcommand = new SparccCommand();                 }
         else if(commandName == "make.lookup")                  {       shellcommand = new MakeLookupCommand();                         }
         else if(commandName == "rename.seqs")                  {       shellcommand = new RenameSeqsCommand();                         }