added get.sharedotu command

[mothur.git] / commandfactory.cpp

diff --git a/commandfactory.cpp b/commandfactory.cpp
index dd5b36317deae9007ccf8951f8133f573e75e316..433702466c5b531c84edb79a45018a589dceaf86 100644 (file)
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -55,6 +55,7 @@
 #include "removeseqscommand.h"
 #include "systemcommand.h"
 #include "secondarystructurecommand.h"
+#include "getsharedotucommand.h"
 
 /***********************************************************/
 
@@ -108,6 +109,7 @@ CommandFactory::CommandFactory(){
        commands["remove.seqs"]                 = "get.seqs";
        commands["system"]                              = "system";
        commands["align.check"]                 = "align.check";
+       commands["get.sharedotu"]               = "get.sharedotu";
        commands["quit"]                                = "quit"; 
 
 }
@@ -171,6 +173,7 @@ Command* CommandFactory::getCommand(string commandName, string optionString){
                else if(commandName == "merge.files")                   {       command = new MergeFileCommand(optionString);                   }
                else if(commandName == "system")                                {       command = new SystemCommand(optionString);                              }
                else if(commandName == "align.check")                   {       command = new AlignCheckCommand(optionString);                  }
+               else if(commandName == "get.sharedotu")                 {       command = new GetSharedOTUCommand(optionString);                }
                else                                                                                    {       command = new NoCommand(optionString);                                  }
 
                return command;