fixed metastats, added resize to cluster.classic, added code to kill children if...

[mothur.git] / commandfactory.cpp

diff --git a/commandfactory.cpp b/commandfactory.cpp
index 927f3742216529f54ea12a769bae752501b7fe33..3ac378120919198ff3a91780e27a881c275364d4 100644 (file)
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -96,6 +96,7 @@
 #include "deuniqueseqscommand.h"
 #include "pairwiseseqscommand.h"
 #include "clusterdoturcommand.h"
+#include "subsamplecommand.h"
 
 
 /*******************************************************/
@@ -197,6 +198,7 @@ CommandFactory::CommandFactory(){
        commands["fastq.info"]                  = "fastq.info";
        commands["deunique.seqs"]               = "deunique.seqs";
        commands["cluster.classic"]             = "cluster.classic";
+       commands["sub.sample"]                  = "sub.sample";
        commands["pairwise.seqs"]               = "MPIEnabled";
        commands["pipeline.pds"]                = "MPIEnabled";
        commands["classify.seqs"]               = "MPIEnabled"; 
@@ -344,6 +346,7 @@ Command* CommandFactory::getCommand(string commandName, string optionString){
                else if(commandName == "deunique.seqs")                 {       command = new DeUniqueSeqsCommand(optionString);                        }
                else if(commandName == "pairwise.seqs")                 {       command = new PairwiseSeqsCommand(optionString);                        }
                else if(commandName == "cluster.classic")               {       command = new ClusterDoturCommand(optionString);                        }
+               else if(commandName == "sub.sample")                    {       command = new SubSampleCommand(optionString);                           }
                else                                                                                    {       command = new NoCommand(optionString);                                          }
 
                return command;
@@ -458,6 +461,7 @@ Command* CommandFactory::getCommand(string commandName, string optionString, str
                else if(commandName == "deunique.seqs")                 {       pipecommand = new DeUniqueSeqsCommand(optionString);                    }
                else if(commandName == "pairwise.seqs")                 {       pipecommand = new PairwiseSeqsCommand(optionString);                    }
                else if(commandName == "cluster.classic")               {       pipecommand = new ClusterDoturCommand(optionString);                    }
+               else if(commandName == "sub.sample")                    {       pipecommand = new SubSampleCommand(optionString);                               }
                else                                                                                    {       pipecommand = new NoCommand(optionString);                                              }
 
                return pipecommand;
@@ -560,6 +564,7 @@ Command* CommandFactory::getCommand(string commandName){
                else if(commandName == "deunique.seqs")                 {       shellcommand = new DeUniqueSeqsCommand();                       }
                else if(commandName == "pairwise.seqs")                 {       shellcommand = new PairwiseSeqsCommand();                       }
                else if(commandName == "cluster.classic")               {       shellcommand = new ClusterDoturCommand();                       }
+               else if(commandName == "sub.sample")                    {       shellcommand = new SubSampleCommand();                          }
                else                                                                                    {       shellcommand = new NoCommand();                                         }
 
                return shellcommand;