testing 1.22.0

[mothur.git] / commandfactory.cpp

diff --git a/commandfactory.cpp b/commandfactory.cpp
index b8261670c44d35b4bcc04a01db993d12fd653823..2fc6875c6430bd769e3e8b56e484b5da1561a30c 100644 (file)
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -263,7 +263,7 @@ CommandFactory::CommandFactory(){
        commands["screen.seqs"]                 = "MPIEnabled";
        commands["summary.seqs"]                = "MPIEnabled";
        commands["cluster.split"]               = "MPIEnabled";
-       commands["shhh.seqs"]                   = "MPIEnabled";
+       commands["shhh.flows"]                  = "MPIEnabled";
        commands["sens.spec"]                   = "sens.spec";
        commands["seq.error"]                   = "seq.error";
        commands["seq.error"]                   = "summary.tax";
@@ -349,7 +349,7 @@ Command* CommandFactory::getCommand(string commandName, string optionString){
                else if(commandName == "reverse.seqs")                  {       command = new ReverseSeqsCommand(optionString);                         }
                else if(commandName == "trim.seqs")                             {       command = new TrimSeqsCommand(optionString);                            }
                else if(commandName == "trim.flows")                    {       command = new TrimFlowsCommand(optionString);                           }
-               else if(commandName == "shhh.seqs")                             {       command = new ShhherCommand(optionString);                                      }
+               else if(commandName == "shhh.flows")                    {       command = new ShhherCommand(optionString);                                      }
                else if(commandName == "list.seqs")                             {       command = new ListSeqsCommand(optionString);                            }
                else if(commandName == "get.seqs")                              {       command = new GetSeqsCommand(optionString);                                     }
                else if(commandName == "remove.seqs")                   {       command = new RemoveSeqsCommand(optionString);                          }
@@ -491,7 +491,7 @@ Command* CommandFactory::getCommand(string commandName, string optionString, str
                else if(commandName == "reverse.seqs")                  {       pipecommand = new ReverseSeqsCommand(optionString);                             }
                else if(commandName == "trim.seqs")                             {       pipecommand = new TrimSeqsCommand(optionString);                                }
                else if(commandName == "trim.flows")                    {       pipecommand = new TrimFlowsCommand(optionString);                               }
-               else if(commandName == "shhh.seqs")                             {       pipecommand = new ShhherCommand(optionString);                                  }
+               else if(commandName == "shhh.flows")                    {       pipecommand = new ShhherCommand(optionString);                                  }
                else if(commandName == "list.seqs")                             {       pipecommand = new ListSeqsCommand(optionString);                                }
                else if(commandName == "get.seqs")                              {       pipecommand = new GetSeqsCommand(optionString);                                 }
                else if(commandName == "remove.seqs")                   {       pipecommand = new RemoveSeqsCommand(optionString);                              }
@@ -620,7 +620,7 @@ Command* CommandFactory::getCommand(string commandName){
                else if(commandName == "reverse.seqs")                  {       shellcommand = new ReverseSeqsCommand();                        }
                else if(commandName == "trim.seqs")                             {       shellcommand = new TrimSeqsCommand();                           }
                else if(commandName == "trim.flows")                    {       shellcommand = new TrimFlowsCommand();                          }
-               else if(commandName == "shhh.seqs")                             {       shellcommand = new ShhherCommand();                                     }
+               else if(commandName == "shhh.flows")                    {       shellcommand = new ShhherCommand();                                     }
                else if(commandName == "list.seqs")                             {       shellcommand = new ListSeqsCommand();                           }
                else if(commandName == "get.seqs")                              {       shellcommand = new GetSeqsCommand();                            }
                else if(commandName == "remove.seqs")                   {       shellcommand = new RemoveSeqsCommand();                         }