fixed summary.shared bug and set jumble default to 1.

[mothur.git] / commandfactory.cpp

diff --git a/commandfactory.cpp b/commandfactory.cpp
index 6e62995c32306cbcd0c9c9259ae0317a8ff706f9..2419369ef4524f984464f4385734de66e4795d31 100644 (file)
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -9,6 +9,7 @@
 
 #include "command.hpp"
 #include "readdistcommand.h"
+#include "readtreecommand.h"
 #include "readotucommand.h"
 #include "clustercommand.h"
 #include "parselistcommand.h"
@@ -50,6 +51,7 @@ Command* CommandFactory::getCommand(string commandName){
 
                         if(commandName == "read.dist")                         {       command = new ReadDistCommand();                }
                else if(commandName == "read.otu")                              {       command = new ReadOtuCommand();                 }
+               else if(commandName == "read.tree")                             {       command = new ReadTreeCommand();                }
                else if(commandName == "cluster")                               {       command = new ClusterCommand();                 }
                else if(commandName == "deconvolute")                   {       command = new DeconvoluteCommand();             }
                else if(commandName == "help")                                  {       command = new HelpCommand();                    }