added pca command

[mothur.git] / commandfactory.cpp

diff --git a/commandfactory.cpp b/commandfactory.cpp
index d2b22d59b06c469a12c7fce92b132a7971453f50..2417d8dda900fe4aac1cdf0d4ebea36209c2796c 100644 (file)
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -62,6 +62,7 @@
 #include "phylotypecommand.h"
 #include "mgclustercommand.h"
 #include "preclustercommand.h"
+#include "pcacommand.h"
 
 /*******************************************************/
 
@@ -133,6 +134,7 @@ CommandFactory::CommandFactory(){
        commands["phylotype"]                   = "phylotype";
        commands["mgcluster"]                   = "mgcluster";
        commands["pre.cluster"]                 = "pre.cluster";
+       commands["pca"]                                 = "pca";
 
 }
 /***********************************************************/
@@ -202,6 +204,7 @@ Command* CommandFactory::getCommand(string commandName, string optionString){
                else if(commandName == "phylotype")                             {       command = new PhylotypeCommand(optionString);                   }
                else if(commandName == "mgcluster")                             {       command = new MGClusterCommand(optionString);                   }
                else if(commandName == "pre.cluster")                   {       command = new PreClusterCommand(optionString);                  }
+               else if(commandName == "pca")                                   {       command = new PCACommand(optionString);                                 }
                else                                                                                    {       command = new NoCommand(optionString);                                  }
 
                return command;