added out.hierarchy command

[mothur.git] / commandfactory.cpp

diff --git a/commandfactory.cpp b/commandfactory.cpp
index 2417d8dda900fe4aac1cdf0d4ebea36209c2796c..0da5986187ec2a3d4c2920c854cd34d101529528 100644 (file)
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -63,6 +63,7 @@
 #include "mgclustercommand.h"
 #include "preclustercommand.h"
 #include "pcacommand.h"
+#include "otuhierarchycommand.h"
 
 /*******************************************************/
 
@@ -135,6 +136,7 @@ CommandFactory::CommandFactory(){
        commands["mgcluster"]                   = "mgcluster";
        commands["pre.cluster"]                 = "pre.cluster";
        commands["pca"]                                 = "pca";
+       commands["otu.hierarchy"]               = "otu.hierarchy";
 
 }
 /***********************************************************/
@@ -205,6 +207,7 @@ Command* CommandFactory::getCommand(string commandName, string optionString){
                else if(commandName == "mgcluster")                             {       command = new MGClusterCommand(optionString);                   }
                else if(commandName == "pre.cluster")                   {       command = new PreClusterCommand(optionString);                  }
                else if(commandName == "pca")                                   {       command = new PCACommand(optionString);                                 }
+               else if(commandName == "otu.hierarchy")                 {       command = new OtuHierarchyCommand(optionString);                }
                else                                                                                    {       command = new NoCommand(optionString);                                  }
 
                return command;