modified bin.seqs and get.oturep commands to include use of a groupfile if provided...

[mothur.git] / commandfactory.cpp

diff --git a/commandfactory.cpp b/commandfactory.cpp
index 21e7b54548a370065ab554d3a2b0f7b5c4887146..06e7e84f06602796d143cdb8d535e46006dc0fb1 100644 (file)
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -42,7 +42,6 @@
 #include "concensuscommand.h"
 #include "distancecommand.h"
 #include "aligncommand.h"
-#include "getrepseqscommand.h"
 #include "matrixoutputcommand.h"
 
 
@@ -91,7 +90,6 @@ Command* CommandFactory::getCommand(string commandName){
                else if(commandName == "filter.seqs")                   {   command = new FilterSeqsCommand();          }
                else if(commandName == "venn")                                  {   command = new VennCommand();                                }
                else if(commandName == "bin.seqs")                              {   command = new BinSeqCommand();                              }
-               else if(commandName == "get.repseqs")                   {   command = new GetRepSeqsCommand();                  }
                else if(commandName == "get.oturep")                    {   command = new GetOTURepCommand();                   }
                else if(commandName == "tree.shared")                   {   command = new TreeGroupCommand();                   }
                else if(commandName == "dist.shared")                   {   command = new MatrixOutputCommand();                }