added load.logfile command. changed summary.single output for subsample=t.

[mothur.git] / command.hpp

diff --git a/command.hpp b/command.hpp
index 22f118164eb04e7d22c0438e3e42c56b79ed0f3d..f5e09042234f1c39ac8010f859e6f69708871dc3 100644 (file)
--- a/command.hpp
+++ b/command.hpp
@@ -33,6 +33,7 @@ class Command {
                virtual string getDescription() = 0;
                
                virtual map<string, vector<string> > getOutputFiles() { return outputTypes; }
+        virtual string getOutputFileNameTag(string, string) = 0;  //we may not know the complete filename, because some commands use info from the file to create the output file name (ie label). but we do the ending tag which should be enough to find the output file name from a list. Allows for optional passing of the inputFileName for the commands that require its extension.
                virtual vector<string> setParameters() = 0; //to fill parameters
                virtual vector<CommandParameter> getParameters() { return parameters; }