added modify names parameter to set.dir

[mothur.git] / collectsharedcommand.h

diff --git a/collectsharedcommand.h b/collectsharedcommand.h
index a10fd554a2f6e062bdecd37eb7e357d6de5283e6..868cd473b29cb97ba5ee38f847aab8343e06c3ac 100644 (file)
--- a/collectsharedcommand.h
+++ b/collectsharedcommand.h
@@ -29,9 +29,12 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "collect.shared";                      }
        string getCommandCategory()             { return "OTU-Based Approaches";        }
-       string getHelpString(); 
-       string getCitation() { return "http://www.mothur.org/wiki/Collect.shared"; }
        
+       string getHelpString(); 
+    string getOutputPattern(string);   
+       string getCitation() { return "Schloss PD, Handelsman J (2006). Introducing SONS, A tool that compares the membership of microbial communities. Appl Environ Microbiol 72: 6773-9. \nhttp://www.mothur.org/wiki/Collect.shared"; }
+       string getDescription()         { return "generates collector's curves for calculators, which describe the similarity between communities or their shared richness"; }
+
        int execute(); 
        void help() { m->mothurOut(getHelpString()); }