fixes while testing

[mothur.git] / collectsharedcommand.cpp

diff --git a/collectsharedcommand.cpp b/collectsharedcommand.cpp
index 87194893f3a1cc5a027646766c36f9b7db9557cb..d63930d071da178e5ddcfdb82950ae37b03718cd 100644 (file)
--- a/collectsharedcommand.cpp
+++ b/collectsharedcommand.cpp
@@ -71,6 +71,7 @@ vector<string> CollectSharedCommand::getRequiredFiles(){
 //**********************************************************************************************************************
 CollectSharedCommand::CollectSharedCommand(){  
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["sharedchao"] = tempOutNames;