Added get.line command.

[mothur.git] / collectcommand.h

diff --git a/collectcommand.h b/collectcommand.h
index 686c4910c7f6e50fc572be4a4408d08d838b5933..64362ef61cdfdc18da9cb5b170a88ff9713d93c9 100644 (file)
--- a/collectcommand.h
+++ b/collectcommand.h
@@ -25,11 +25,11 @@
        The collect command generates a collector's curve from the given file.  
        The collect command can only be executed after a successful read.list, read.sabund or read.rabund command, with one exception. 
        The collect command can be executed after a successful cluster command.  It will use the .list file from the output of the cluster.  
-       The collect command outputs a file for each estimator you choose to use.  The collect command parameters are label, line, freq, single.  
+       The collect command outputs a file for each estimator you choose to use.  The collect command parameters are label, line, freq, single, abund.  
        No parameters are required, but you may not use both the line and label  parameters at the same time.  
-       The collect command should be in the following format: collect(label=yourLabel, line=yourLines, freq=yourFreq, single=yourEstimators). 
+       The collect command should be in the following format: collect(label=yourLabel, line=yourLines, freq=yourFreq, single=yourEstimators, abund=yourAbund). 
        example collect(label=unique-.01-.03, line=0,5,10, freq=10, single=collect-chao-ace-jack).  
-       The default values for  freq is 100, and single are collect-chao-ace-jack-bootstrap-shannon-npshannon-simpson.  
+       The default values for  freq is 100, for abund is 10, and single are collect-chao-ace-jack-bootstrap-shannon-npshannon-simpson.  
        The valid single estimators are: collect-chao-ace-jack-bootstrap-shannon-npshannon-simpson. 
        The label and line parameters are used to analyze specific lines in your input. */
 
@@ -52,7 +52,7 @@ private:
        Collect* cCurve;
        ValidCalculators* validCalculator;
        vector<Display*> cDisplays;
-       int freq;
+       int freq, abund;
 
 };