removed line option

[mothur.git] / collectcommand.h

diff --git a/collectcommand.h b/collectcommand.h
index b099c8a44390ef361019de2e12dff6af71f1dc73..10894e7218b5d2d607f2c0fa931f7c10a0f6146d 100644 (file)
--- a/collectcommand.h
+++ b/collectcommand.h
@@ -22,13 +22,13 @@
        The collect command generates a collector's curve from the given file.  
        The collect command can only be executed after a successful read.list, read.sabund or read.rabund command, with one exception. 
        The collect command can be executed after a successful cluster command.  It will use the .list file from the output of the cluster.  
-       The collect command outputs a file for each estimator you choose to use.  The collect command parameters are label, line, freq, single, abund.  
-       No parameters are required, but you may not use both the line and label  parameters at the same time.  
-       The collect command should be in the following format: collect(label=yourLabel, line=yourLines, freq=yourFreq, single=yourEstimators, abund=yourAbund). 
-       example collect(label=unique-.01-.03, line=0,5,10, freq=10, single=collect-chao-ace-jack).  
+       The collect command outputs a file for each estimator you choose to use.  The collect command parameters are label, freq, single, abund.  
+       No parameters are required.  
+       The collect command should be in the following format: collect(label=yourLabel, freq=yourFreq, single=yourEstimators, abund=yourAbund). 
+       example collect(label=unique-.01-.03, freq=10, single=collect-chao-ace-jack).  
        The default values for  freq is 100, for abund is 10, and single are collect-chao-ace-jack-bootstrap-shannon-npshannon-simpson.  
        The valid single estimators are: collect-chao-ace-jack-bootstrap-shannon-npshannon-simpson. 
-       The label and line parameters are used to analyze specific lines in your input. */
+       The label parameter is used to analyze specific labels in your input. */
 
 
 
@@ -53,9 +53,8 @@ private:
        int freq, abund, size;
 
        bool abort, allLines;
-       set<int> lines; //hold lines to be used
        set<string> labels; //holds labels to be used
-       string line, label, calc;
+       string label, calc;
        vector<string>  Estimators;