added nseqs and sharednseqs calculators, removed excess tabs in output files.

[mothur.git] / collectcommand.cpp

diff --git a/collectcommand.cpp b/collectcommand.cpp
index 95a79d5bc69f763688915ecb998bd47cff162f1e..000f85d1d91f3922766f024d71dc157640b2eabe 100644 (file)
--- a/collectcommand.cpp
+++ b/collectcommand.cpp
@@ -10,6 +10,7 @@
 #include "collectcommand.h"
 #include "ace.h"
 #include "sobs.h"
+#include "nseqs.h"
 #include "chao1.h"
 #include "bootstrap.h"
 #include "simpson.h"
@@ -35,8 +36,10 @@ CollectCommand::CollectCommand(){
                                        cDisplays.push_back(new CollectDisplay(new Sobs(), new OneColumnFile(fileNameRoot+"sobs")));
                                }else if (globaldata->Estimators[i] == "chao") { 
                                        cDisplays.push_back(new CollectDisplay(new Chao1(), new ThreeColumnFile(fileNameRoot+"chao")));
+                               }else if (globaldata->Estimators[i] == "nseqs") { 
+                                       cDisplays.push_back(new CollectDisplay(new NSeqs(), new OneColumnFile(fileNameRoot+"nseqs")));
                                }else if (globaldata->Estimators[i] == "ace") { 
-                               convert(globaldata->getAbund(), abund);
+                                       convert(globaldata->getAbund(), abund);
                                        cDisplays.push_back(new CollectDisplay(new Ace(abund), new ThreeColumnFile(fileNameRoot+"ace")));
                                }else if (globaldata->Estimators[i] == "jack") { 
                                        cDisplays.push_back(new CollectDisplay(new Jackknife(), new ThreeColumnFile(fileNameRoot+"jack")));