1.18.1

[mothur.git] / collect.cpp

diff --git a/collect.cpp b/collect.cpp
index 8db4a28c5d33661741916e0d7560be470fd97ab2..78fd05c0c9470117b9750096cbdf8a8a5a6a15f3 100644 (file)
--- a/collect.cpp
+++ b/collect.cpp
@@ -80,7 +80,7 @@ try {
                         temp->setGroup(m->Groups[i]);
                                                lookup.push_back(temp);
                 }
-
+       
                 SharedCollectorsCurveData* ccd = new SharedCollectorsCurveData();
         
                 //initialize labels for output
@@ -114,7 +114,7 @@ try {
                         //get first sample
                         individual chosen = sharedorder->get(i);
                         int abundance; 
-                                        
+                                                    
                         //set info for sharedvector in chosens group
                         for (int j = 0; j < lookup.size(); j++) { 
                                                        if (chosen.group == lookup[j]->getGroup()) {
@@ -141,14 +141,16 @@ try {
                                                                                                for (int w = 0; w < lookup.size(); w++) {
                                                                                                        if ((w != k) && (w != l)) { subset.push_back(lookup[w]); }
                                                                                                }
-                                                                                       
+                                               
                                                 ccd->updateSharedData(subset, i+1, m->Groups.size(), pair);
                                         }
                                         n++;
                                 }
+                                                       
                                                                //if this is a calculator that can do multiples then do them
                                                                pair = false;
                                                                ccd->updateSharedData(lookup, i+1, m->Groups.size(), pair); 
+                                                       
                         }
                         totalNumSeq = i+1;
                 }
@@ -177,7 +179,7 @@ try {
                                                pair = false;
                                                ccd->updateSharedData(lookup, totalNumSeq, m->Groups.size(), pair); 
                 }
-                
+        
                 //resets output files
                 for(int i=0;i<displays.size();i++){
                         displays[i]->reset();