added fasta, qfile, trim, accnos and sfftxt parameter to sffinfo command. added...

[mothur.git] / collect.cpp

diff --git a/collect.cpp b/collect.cpp
index fa6f677a3be5c5f9d0e535acdc870aaae226c016..79e997de38bc8938bbcdb72d7134a566a7b9a2bb 100644 (file)
--- a/collect.cpp
+++ b/collect.cpp
@@ -88,16 +88,17 @@ try {
                 //initialize labels for output
                 //makes  'uniqueAB         uniqueAC  uniqueBC' if your groups are A, B, C
                 getGroupComb();
-                groupLabel = ""; 
-                for (int s = 0; s < groupComb.size(); s++) {
-                        groupLabel = groupLabel + label + groupComb[s] + "\t";
-                }
-                               
-                               //for multi displays
-                               string groupLabelAll = groupLabel + label + "all\t";
                                
                 for(int i=0;i<displays.size();i++){
                         ccd->registerDisplay(displays[i]); //adds a display[i] to cdd
+                                               bool hasLciHci = displays[i]->hasLciHci();
+                                               groupLabel = "";
+                                               for (int s = 0; s < groupComb.size(); s++) {
+                                                       if (hasLciHci) {  groupLabel = groupLabel + label + groupComb[s] + "\t" + label + groupComb[s] + "lci\t" + label + groupComb[s] + "hci\t"; }
+                                                       else{  groupLabel = groupLabel + label + groupComb[s] + "\t";  }
+                                               }
+
+                                               string groupLabelAll = groupLabel + label + "all\t"; 
                                                if ((displays[i]->isCalcMultiple() == true) && (displays[i]->getAll() == true)) {   displays[i]->init(groupLabelAll); }
                                                else {  displays[i]->init(groupLabel);  }           
                 }