string method, fileroot, tag, outputDir, phylipfile, columnfile, namefile, distfile, format, showabund, timing, splitmethod, taxFile;
double cutoff, splitcutoff;
- int precision, length, processors;
+ int precision, length, processors, taxLevelCutoff;
bool print_start, abort, hard;
time_t start;
ofstream outList, outRabund, outSabund;