string method, fileroot, tag, outputDir, phylipfile, columnfile, namefile, countfile, distfile, format, showabund, timing, splitmethod, taxFile, fastafile;
double cutoff, splitcutoff;
int precision, length, processors, taxLevelCutoff;
- bool print_start, abort, hard, large, classic;
+ bool print_start, abort, hard, large, classic, runCluster;
time_t start;
ofstream outList, outRabund, outSabund;