added adjust parameter to mgcluster. fixed bug in classify.otu with countable. fixed...

[mothur.git] / clustersplitcommand.cpp

diff --git a/clustersplitcommand.cpp b/clustersplitcommand.cpp
index 270ea6208d8ead0683d8cf46fb8d7a417469c243..b02bd20063e9f70bb422fa541403013d6a1976ab 100644 (file)
--- a/clustersplitcommand.cpp
+++ b/clustersplitcommand.cpp
@@ -1330,9 +1330,10 @@ string ClusterSplitCommand::clusterFile(string thisDistFile, string thisNamefile
         m->mothurOutEndLine(); m->mothurOut("Clustering " + thisDistFile); m->mothurOutEndLine();
                
         //create cluster
-        if (method == "furthest")      {       cluster = new CompleteLinkage(rabund, list, matrix, cutoff, method); }
-        else if(method == "nearest"){  cluster = new SingleLinkage(rabund, list, matrix, cutoff, method); }
-        else if(method == "average"){  cluster = new AverageLinkage(rabund, list, matrix, cutoff, method);     }
+        float adjust = -1.0;
+        if (method == "furthest")      {       cluster = new CompleteLinkage(rabund, list, matrix, cutoff, method, adjust); }
+        else if(method == "nearest"){  cluster = new SingleLinkage(rabund, list, matrix, cutoff, method, adjust); }
+        else if(method == "average"){  cluster = new AverageLinkage(rabund, list, matrix, cutoff, method, adjust);     }
         tag = cluster->getTag();
                
         if (outputDir == "") { outputDir += m->hasPath(thisDistFile); }