sped up splitting of distance file by 2.5 times by buffering the read and writes.

[mothur.git] / clustersplitcommand.cpp

diff --git a/clustersplitcommand.cpp b/clustersplitcommand.cpp
index d10a51fde293fa203e03a856ba67c63d5895a55b..861c4fbf3da78e42313d7e76751efd2f5d05f3bf 100644 (file)
--- a/clustersplitcommand.cpp
+++ b/clustersplitcommand.cpp
@@ -625,6 +625,8 @@ vector<string> ClusterSplitCommand::cluster(vector< map<string, string> > distNa
                        globaldata->setNameFile(thisNamefile);
                        globaldata->setColumnFile(thisDistFile); globaldata->setFormat("column");
                        
+                       m->mothurOutEndLine(); m->mothurOut("Reading " + thisDistFile); m->mothurOutEndLine();
+                       
                        ReadMatrix* read = new ReadColumnMatrix(thisDistFile);  
                        read->setCutoff(cutoff);