if (temp == "not found") { temp = "100"; }
//saves precision legnth for formatting below
length = temp.length();
- convert(temp, precision);
+ m->mothurConvert(temp, precision);
temp = validParameter.validFile(parameters, "hard", false); if (temp == "not found") { temp = "T"; }
hard = m->isTrue(temp);
temp = validParameter.validFile(parameters, "processors", false); if (temp == "not found"){ temp = m->getProcessors(); }
m->setProcessors(temp);
- convert(temp, processors);
+ m->mothurConvert(temp, processors);
temp = validParameter.validFile(parameters, "splitmethod", false);
if (splitmethod != "fasta") {
}
temp = validParameter.validFile(parameters, "cutoff", false); if (temp == "not found") { temp = "0.25"; }
- convert(temp, cutoff);
+ m->mothurConvert(temp, cutoff);
cutoff += (5 / (precision * 10.0));
temp = validParameter.validFile(parameters, "taxlevel", false); if (temp == "not found") { temp = "3"; }
- convert(temp, taxLevelCutoff);
+ m->mothurConvert(temp, taxLevelCutoff);
method = validParameter.validFile(parameters, "method", false); if (method == "not found") { method = "average"; }