if (m->debug) { m->mothurOut("[DEBUG]: distName.size() = " + toString(distName.size()) + ".\n"); }
//output a merged distance file
- if (splitmethod == "fasta") { createMergedDistanceFile(distName); }
-
+ //if (splitmethod == "fasta") { createMergedDistanceFile(distName); }
if (m->control_pressed) { return 0; }
if ((processToAssign-1) == 1) { m->mothurOut(distName[i].begin()->first + "\n"); }
}
- //not lets reverse the order of ever other process, so we balance big files running with little ones
+ //now lets reverse the order of ever other process, so we balance big files running with little ones
for (int i = 0; i < processors; i++) {
//cout << i << endl;
int remainder = ((i+1) % processors);
cluster->readPhylipFile(thisDistFile, nameMap);
}else if (countfile != "") {
ct = new CountTable();
- ct->readTable(thisNamefile);
+ ct->readTable(thisNamefile, false);
cluster->readPhylipFile(thisDistFile, ct);
}
tag = cluster->getTag();
read->read(nameMap);
}else if (countfile != "") {
ct = new CountTable();
- ct->readTable(thisNamefile);
+ ct->readTable(thisNamefile, false);
read->read(ct);
}else { read->read(nameMap); }