classify.seqs allows sequences to be in taxonomy file that are not in template. ...

[mothur.git] / clustersplitcommand.cpp

diff --git a/clustersplitcommand.cpp b/clustersplitcommand.cpp
index b3ce0f938c90d55fcfb86360677e3fd5e93a01b5..09c2da84c64b2d0558ede1bf5bde35b1ddfc43cd 100644 (file)
--- a/clustersplitcommand.cpp
+++ b/clustersplitcommand.cpp
@@ -1285,7 +1285,7 @@ string ClusterSplitCommand::clusterFile(string thisDistFile, string thisNamefile
             ct = new CountTable();
             ct->readTable(thisNamefile);
             read->read(ct);
-        }
+        }else { read->read(nameMap); }
                
                list = read->getListVector();
         oldList = *list;