added flag to count table read so that commands that don't require the group info...

[mothur.git] / clusterfragmentscommand.cpp

diff --git a/clusterfragmentscommand.cpp b/clusterfragmentscommand.cpp
index 1b8cc71706710a3c80d53f6ff2fd877d07d98103..f17c11e7384330c4b9eb4d5af86f734fc0d0f21f 100644 (file)
--- a/clusterfragmentscommand.cpp
+++ b/clusterfragmentscommand.cpp
@@ -181,7 +181,7 @@ ClusterFragmentsCommand::ClusterFragmentsCommand(string option) {
             countfile = validParameter.validFile(parameters, "count", true);
                        if (countfile == "not open") { abort = true; countfile = ""; }  
                        else if (countfile == "not found") { countfile = ""; }
-                       else { ct.readTable(countfile); m->setCountTableFile(countfile); }
+                       else { ct.readTable(countfile, false); m->setCountTableFile(countfile); }
                        
             if ((countfile != "") && (namefile != "")) { m->mothurOut("When executing a cluster.fragments command you must enter ONLY ONE of the following: count or name."); m->mothurOutEndLine(); abort = true; }