fixes while testing

[mothur.git] / clusterfragmentscommand.cpp

diff --git a/clusterfragmentscommand.cpp b/clusterfragmentscommand.cpp
index b5681db57833ae10e9bf665b53e77bea363473c2..d24d2cae51d0610af4a9fb5517c676058a7a4af6 100644 (file)
--- a/clusterfragmentscommand.cpp
+++ b/clusterfragmentscommand.cpp
@@ -39,6 +39,7 @@ vector<string> ClusterFragmentsCommand::getValidParameters(){
 //**********************************************************************************************************************
 ClusterFragmentsCommand::ClusterFragmentsCommand(){    
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["fasta"] = tempOutNames;