PDS: update citation fields

[mothur.git] / clusterdoturcommand.h

diff --git a/clusterdoturcommand.h b/clusterdoturcommand.h
index 42be4a6d659e6b290ccdd37d3be964ad49797df4..09ee8229984a488f5eeecbcf269922a01c5d9500 100644 (file)
--- a/clusterdoturcommand.h
+++ b/clusterdoturcommand.h
@@ -27,8 +27,10 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "cluster.classic";             }
        string getCommandCategory()             { return "Clustering";                  }
-       string getHelpString(); 
-       string getCitation() { return "Schloss PD, Handelsman J (2005). Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 1501-6. \nhttp://www.mothur.org/wiki/Cluster.classic"; }
+    string getOutputFileNameTag(string, string);
+       string getHelpString();         
+       string getCitation() { return "Schloss PD, Westcott SL (2011). Assessing and improving methods used in OTU-based approaches for 16S rRNA gene sequence analysis. Appl Environ Microbiol 77:3219.\nSchloss PD, Handelsman J (2005). Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 1501-6.\nhttp://www.mothur.org/wiki/Cluster.classic\n";}
+       string getDescription()         { return "cluster your sequences into OTUs using DOTUR’s method"; }
        
        int execute(); 
        void help() { m->mothurOut(getHelpString()); }