changed cluster.classic so that it does not adjust the cutoff

[mothur.git] / clusterdoturcommand.cpp

diff --git a/clusterdoturcommand.cpp b/clusterdoturcommand.cpp
index 21840e482d4ccadcd138f35f4ef9fda1e0f7881c..4987d4e9305b86496e9d7655a62d27e6a1c779a2 100644 (file)
--- a/clusterdoturcommand.cpp
+++ b/clusterdoturcommand.cpp
@@ -223,7 +223,7 @@ int ClusterDoturCommand::execute(){
                oldRAbund = *rabund;
                oldList = *list;
 
-               double saveCutoff = cutoff;
+               //double saveCutoff = cutoff;
                
                int estart = time(NULL);
        
@@ -266,11 +266,11 @@ int ClusterDoturCommand::execute(){
                
                delete cluster; delete nameMap; delete list; delete rabund;
        
-               if (saveCutoff != cutoff) { 
-                       if (hard)       {  saveCutoff = m->ceilDist(saveCutoff, precision);     }
-                       else            {       saveCutoff = m->roundDist(saveCutoff, precision);  }
-                       m->mothurOut("changed cutoff to " + toString(cutoff)); m->mothurOutEndLine(); 
-               }
+               //if (saveCutoff != cutoff) { 
+               //      if (hard)       {  saveCutoff = m->ceilDist(saveCutoff, precision);     }
+               //      else            {       saveCutoff = m->roundDist(saveCutoff, precision);  }
+               //      m->mothurOut("changed cutoff to " + toString(cutoff)); m->mothurOutEndLine(); 
+               //}
                
                m->mothurOutEndLine();
                m->mothurOut("Output File Names: "); m->mothurOutEndLine();