working on pam

[mothur.git] / clustercommand.h

diff --git a/clustercommand.h b/clustercommand.h
index 96b7c08861f216862de0c1e600d07fed463eb56a..cd9f47b07d9e8af9a6f04c014fabcfaf36a2818e 100644 (file)
--- a/clustercommand.h
+++ b/clustercommand.h
@@ -21,7 +21,7 @@
        The cluster command outputs a .list , .rabund and .sabund files.  
        The cluster command parameter options are method, cuttoff and precision. No parameters are required.  
        The cluster command should be in the following format: cluster(method=yourMethod, cutoff=yourCutoff, precision=yourPrecision).  
-       The acceptable methods are furthest, nearest and average.  If you do not provide a method the default algorythm is furthest neighbor.  
+       The acceptable methods are furthest, nearest and average.  If you do not provide a method the default algorithm is furthest neighbor.  
        The cluster() command outputs three files *.list, *.rabund, and *.sabund.   */
 
 
@@ -56,6 +56,7 @@ private:
 
        string method, fileroot, tag, outputDir, phylipfile, columnfile, namefile, format, distfile, countfile;
        double cutoff;
+    float adjust;
        string showabund, timing;
        int precision, length;
        ofstream sabundFile, rabundFile, listFile;