added warning about merging with something above cutoff to cluster. working on chimeras

[mothur.git] / clustercommand.cpp

diff --git a/clustercommand.cpp b/clustercommand.cpp
index be7cc51d9f4ecf2765cd878a932b3a804e4bf1ba..d14af108d69c36f98617fc2e133c3dcfb537c553 100644 (file)
--- a/clustercommand.cpp
+++ b/clustercommand.cpp
@@ -84,9 +84,9 @@ ClusterCommand::ClusterCommand(string option){
                                }
                                
                                //create cluster
-                               if (method == "furthest")       {       cluster = new CompleteLinkage(rabund, list, matrix, cutoff); }
-                               else if(method == "nearest"){   cluster = new SingleLinkage(rabund, list, matrix, cutoff); }
-                               else if(method == "average"){   cluster = new AverageLinkage(rabund, list, matrix, cutoff);     }
+                               if (method == "furthest")       {       cluster = new CompleteLinkage(rabund, list, matrix, cutoff, method); }
+                               else if(method == "nearest"){   cluster = new SingleLinkage(rabund, list, matrix, cutoff, method); }
+                               else if(method == "average"){   cluster = new AverageLinkage(rabund, list, matrix, cutoff, method);     }
                                tag = cluster->getTag();
                                
                                if (outputDir == "") { outputDir += hasPath(globaldata->inputFileName); }