changed hard parameter in cluster commands

[mothur.git] / clustercommand.cpp

diff --git a/clustercommand.cpp b/clustercommand.cpp
index 9ed67e04433edecd93262c1824732edbb3cd186c..30c45e167ad6a398b23727293577f92362f5d6c7 100644 (file)
--- a/clustercommand.cpp
+++ b/clustercommand.cpp
@@ -62,7 +62,7 @@ ClusterCommand::ClusterCommand(string option)  {
                        temp = validParameter.validFile(parameters, "cutoff", false);
                        if (temp == "not found") { temp = "10"; }
                        convert(temp, cutoff); 
-                       if (!hard) {    cutoff += (5 / (precision * 10.0));  }
+                       cutoff += (5 / (precision * 10.0));  
                        
                        method = validParameter.validFile(parameters, "method", false);
                        if (method == "not found") { method = "furthest"; }
@@ -181,7 +181,12 @@ int ClusterCommand::execute(){
                        cluster->update(cutoff);
        
                        float dist = matrix->getSmallDist();
-                       float rndDist = roundDist(dist, precision);
+                       float rndDist;
+                       if (hard) {
+                               rndDist = ceilDist(dist, precision); 
+                       }else{
+                               rndDist = roundDist(dist, precision); 
+                       }
 
                        if(previousDist <= 0.0000 && dist != previousDist){
                                printData("unique");