added dereplicate parameter to chimera.slayer and chimera.persues. added minnumsample...

[mothur.git] / clustercommand.cpp

diff --git a/clustercommand.cpp b/clustercommand.cpp
index 93e29fd6e4daad8f09c6d373ba3b57e00ea55b52..e4e20622cae08b3578e8e8871616c1cd874da0aa 100644 (file)
--- a/clustercommand.cpp
+++ b/clustercommand.cpp
@@ -336,10 +336,10 @@ int ClusterCommand::execute(){
                
         map<string, string> variables; 
         variables["[filename]"] = fileroot;
-        if (countfile != "") { variables["[tag2]"] = "unique_list"; }
         variables["[clustertag]"] = tag;
         string sabundFileName = getOutputFileName("sabund", variables);
         string rabundFileName = getOutputFileName("rabund", variables);
+        if (countfile != "") { variables["[tag2]"] = "unique_list"; }
         string listFileName = getOutputFileName("list", variables);
         
         if (countfile == "") {