classify.seqs allows sequences to be in taxonomy file that are not in template. ...

[mothur.git] / clustercommand.cpp

diff --git a/clustercommand.cpp b/clustercommand.cpp
index 06e627a615dacf69fe80464db0123582bef510ed..b46e1fb14f9aaf9c34a94216ffd5692c4f043148 100644 (file)
--- a/clustercommand.cpp
+++ b/clustercommand.cpp
@@ -312,7 +312,7 @@ int ClusterCommand::execute(){
             ct = new CountTable();
             ct->readTable(countfile);
             read->read(ct);
-        }
+        }else { read->read(nameMap); }
                
                list = read->getListVector();
                matrix = read->getDMatrix();