changes to dist.seqs and pairwise.seqs and cluster.classic no longer resizes

[mothur.git] / clusterclassic.cpp

diff --git a/clusterclassic.cpp b/clusterclassic.cpp
index 0e48690dc57059bb2ab1af1df3da5df0ea71efa4..287332ad628e33a6a460aee903ba8f7955027c85 100644 (file)
--- a/clusterclassic.cpp
+++ b/clusterclassic.cpp
@@ -279,10 +279,10 @@ void ClusterClassic::clusterBins(){
 
                rabund->set(smallRow, rabund->get(smallRow)+rabund->get(smallCol));     
                rabund->set(smallCol, 0);       
-               for (int i = smallCol+1; i < rabund->size(); i++) {
+               /*for (int i = smallCol+1; i < rabund->size(); i++) {
                        rabund->set((i-1), rabund->get(i));
                }
-               rabund->resize((rabund->size()-1));
+               rabund->resize((rabund->size()-1));*/
                rabund->setLabel(toString(smallDist));
 
        //      cout << '\t' << rabund->get(smallRow) << '\t' << rabund->get(smallCol) << endl;
@@ -300,10 +300,10 @@ void ClusterClassic::clusterNames(){
                
                list->set(smallRow, list->get(smallRow)+','+list->get(smallCol));
                list->set(smallCol, "");        
-               for (int i = smallCol+1; i < list->size(); i++) {
+               /*for (int i = smallCol+1; i < list->size(); i++) {
                        list->set((i-1), list->get(i));
                }
-               list->resize((list->size()-1));
+               list->resize((list->size()-1));*/
                list->setLabel(toString(smallDist));
        
        //      cout << '\t' << list->get(smallRow) << '\t' << list->get(smallCol) << endl;
@@ -356,7 +356,7 @@ void ClusterClassic::update(double& cutOFF){
                clusterNames();
                
                //resize each row
-               for(int i=0;i<nseqs;i++){
+               /*for(int i=0;i<nseqs;i++){
                        for(int j=c+1;j<dMatrix[i].size();j++){
                                dMatrix[i][j-1]=dMatrix[i][j];
                        }
@@ -370,7 +370,7 @@ void ClusterClassic::update(double& cutOFF){
                }       
                
                nseqs--;
-               dMatrix.pop_back();
+               dMatrix.pop_back();*/
 
        }
        catch(exception& e) {