added logfile feature

[mothur.git] / cluster.cpp

diff --git a/cluster.cpp b/cluster.cpp
index 1ccb34943d32b907b656fd6fc6272a11501f549f..b9754bee094c28f7921506371fedf764c76fefd7 100644 (file)
--- a/cluster.cpp
+++ b/cluster.cpp
@@ -56,59 +56,41 @@ void Cluster::getRowColCells(){
                nColCells = colCells.size();
        }
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the Cluster class Function getRowColCells. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               errorOut(e, "Cluster", "getRowColCells");
                exit(1);
        }
-       catch(...) {
-               cout << "An unknown error has occurred in the Cluster class function getRowColCells. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }       
 }
 
 /***********************************************************************/
 
 void Cluster::clusterBins(){
        try {
-       //      cout << smallCol << '\t' << smallRow << '\t' << smallDist << '\t' << rabund->get(smallRow) << '\t' << rabund->get(smallCol);
-
+       
                rabund->set(smallCol, rabund->get(smallRow)+rabund->get(smallCol));     
                rabund->set(smallRow, 0);       
                rabund->setLabel(toString(smallDist));
 
-       //      cout << '\t' << rabund->get(smallRow) << '\t' << rabund->get(smallCol) << endl;
        }
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the Cluster class Function clusterBins. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               errorOut(e, "Cluster", "clusterBins");
                exit(1);
        }
-       catch(...) {
-               cout << "An unknown error has occurred in the Cluster class function clusterBins. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }       
-
-
 }
 
 /***********************************************************************/
 
 void Cluster::clusterNames(){
        try {
-       //      cout << smallCol << '\t' << smallRow << '\t' << smallDist << '\t' << list->get(smallRow) << '\t' << list->get(smallCol);
-
+       
                list->set(smallCol, list->get(smallRow)+','+list->get(smallCol));
                list->set(smallRow, "");        
                list->setLabel(toString(smallDist));
        
-       //      cout << '\t' << list->get(smallRow) << '\t' << list->get(smallCol) << endl;
     }
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the Cluster class Function clusterNames. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               errorOut(e, "Cluster", "clusterNames");
                exit(1);
        }
-       catch(...) {
-               cout << "An unknown error has occurred in the Cluster class function clusterNames. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }       
 }
 
 /***********************************************************************/