chimeras, fix to sabundvector and sharedsabundvector that caused getRabundVector...

[mothur.git] / cluster.cpp

diff --git a/cluster.cpp b/cluster.cpp
index 00d8083275779399748d690b3a9fe84910d91104..931b44d70288c120cf151487f88580e07207cc68 100644 (file)
--- a/cluster.cpp
+++ b/cluster.cpp
@@ -216,6 +216,10 @@ void Cluster::update(){
                for (int i=nColCells-1;i>=0;i--) {
                        if (found[i] == 0) {
                                removeCell(colCells[i], -1, i);
+cout << "smallRow = " << smallRow+1 << " smallCol = " << smallCol+1 << endl;
+                               if (!((colCells[i]->row == smallRow) && (colCells[i]->column == smallCol))) {
+                                       mothurOut("Warning: merging " + toString(colCells[i]->row+1)  + " " + toString(colCells[i]->column+1) + " distance " + toString(colCells[i]->dist) + " value above cutoff. Results will differ from those if cutoff was used in the read.dist command."); mothurOutEndLine();
+                               }
                        }
                }
        }